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Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles?
Xuefeng Cui, Shuai Cheng Li, Babak Alipanahi, Ming Li
Algorithms for Molecular Biology 8: 5 (2013)
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LoopWeaver: Loop Modeling by the Weighted Scaling of Verified Proteins. Journal of Computational Biology
Daniel Holtby, Shuai Cheng Li, Ming Li
Journal of Computational Biology 20(3): 212-223 (2013)
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Detecting Protein Conformational Changes in Interactions via Scaling Known Structures
Fei Guo, Shuai Cheng Li, Wenji Ma, Lusheng Wang
Journal of Computational Biology 20(10): 765-779 (2013)
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The Difficulty Of Protein Structure Alignment Under The RMSD
Shuai Cheng Li
Algorithms for Molecular Biology 8: 1 (2013)
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Protein-protein binding site identification by enumerating the configurations
Fei Guo, Shuai Cheng Li, Lusheng Wang, Daming Zhu
BMC Bioinformatics 13: 158 (2012)
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Clustering 100, 000 Protein Structure Decoys in Minutes
Shuai Cheng Li, Dongbo Bu, and Ming Li
IEEE/ACM Transactions on Computational Biology and Bioinformatics
(IEEE TCBB),9(3): 765-773 (2012).
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Hexagon codes accurate information for side chain conformation
Shuai Cheng Li, Dongbo Bu, and Ming Li
IEEE/ACM Transactions on Computational Biology and Bioinformatics
(IEEE TCBB), 9(1): 240-248 (2012).
- Finding Nearly Optimal GDT Scores
Shuai Cheng Li, Dongbo Bu, Jinbo Xu and Ming Li
Journal of Computational Biology
(JCB), 2011 May;18(5):693-704
- Protein Secondary Structure Prediction Using NMR Chemical Shift Data
Yuzhong Zhao, Babak Alipanahi, Shuai Cheng Li, and Ming Li
Journal of Bioinformatics and Computational Biology (JBCB)
Vol. 8, No. 5, pages 867-884, 2010.
- On Protein Structure Alignment under Distance Constraint
Shuai Cheng Li and Yen Kaow Ng
Theoretical Computer Science (TCS): Special Issue for ISAAC 2009. Vol. 412, No. 32, pages 4187-4199, 2011
- Calibur: a tool for clustering large numbers of protein decoys
Shuai Cheng Li and Yen Kaow Ng
BMC Bioinformatics (BMCBI), Vol. 11, No. 25,
- Finding compact structural motifs
Dongbo Bu, Ming Li, Shuai Cheng Li, Jianbo Qian, Jinbo Xu
Theoretical Computer Science (TCS) Vol. 410, No. 30-32, pages 2834-2839, 2009
- On Two Open Problems in 2-interval Patterns
Shuai Cheng Li, Ming Li
Theoretical Computer Science (TCS) Vol. 410, No. 24-25, pages 2410-2423, 2009
- Predicting local quality of a sequence-structure alignment
Xin Gao, Jinbo Xu, Shuai Cheng Li, Ming Li
Journal of Bioinformatics and Computational Biology (JBCB)
Vol. 7, No. 5, pages 789-810, 2009.
- Discriminative Learning for Protein Conformation Sampling.
Feng Zhao, Shuai Cheng Li, Beckett W. Sterner, Jinbo Xu
PROTEINS: Structure, Function and Bioinformatics, Vol. 73 No. 1, pages 228-240, 2008.
- Designing succinct structural alphabets
Shuai Cheng Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li
Bioinformatics: Special Issue for ISMB 2008, Vol. 24, No. 13, pages 182-189, 2008
- A PTAS for the k-Consensus Structures Problem Under Euclidean Squared Distance
Shuai Cheng Li, Yen Kaow Ng, Louxin Zhang
Algorithms, Vol. 1, No. 2, pages 43-51, 2008.
- Piers: An Efficient Model for Similarity Search in DNA Sequence Databases
Xia Cao, Shuai Cheng Li, Beng Chin Ooi, Anthony K. H. Tung
SIGMOD Record, Vol. 33, No. 2, pages 39-44, 2004.
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- Pedigree Reconstruction using Identity by Descent
Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp and Eran Halperin
Research in Computational Molecular Biology - 15th Annual International Conference
(RECOMB 2011). Accepted
- Finding Largest Well-Predicted Subset of Protein Structure Models
Shuai Cheng Li, Dongbo Bu, Jinbo Xu, and Ming Li
Combinatorial Pattern Matching, 19th Annual Symposium (CPM 2008)
- FragQA: predicting local fragment quality of a sequence-structure alignment (Best Paper Award)
Xin Gao, Dongbo Bu, Shuai Cheng Li, Jinbo Xu, and Ming Li
The 18th International Conference on Genome Informatics (GIW 2007)
- Finding Compact Structural Motifs
Jianbo Qian, Shuai Cheng Li, Dongbo Bu, Ming Li, and Jinbo Xu
Combinatorial Pattern Matching, 18th Annual Symposium (CPM 2007)
- Faster Algorithms for Finding Missing Patterns
Shuai Cheng Li
Theory of Computing 2006, Proceedings of the Twelfth Computing: The Australasian Theory Symposium
(CATS 2006)
- On the Complexity of the Crossing Contact Map Pattern Matching Problem
Shuai Cheng Li and Ming Li
Algorithms in Bioinformatics, 6th International Workshop (WABI 2006)
- Indexing DNA Sequences Using q-Grams (Best Paper Award)
Xia Cao, Shuai Cheng Li, and Anthony K. H. Tung
Database Systems for Advanced Applications, 10th International Conference (DASFAA 2005)
- New Approximation Algorithms for Some Dynamic Storage Allocation Problems
Shuai Cheng Li, Hon Wai Leong, Steven K. Quek
Computing and Combinatorics, 10th Annual International Conference (COCOON 2004)
- String Join Using Precedence Count Matrix
Xia Cao, Shuai Cheng Li, Beng Chin Ooi, Anthony K. H. Tung
The 16th International Conference on Scientific and Statistical Database Management
(SSDBM 2004)
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