Software for Reticulate Networks of Multiple Phylogenetic Trees
for computing a maximum agreement forest (MAF) ,
all maximum agreement forests (MAFs) ,
a maximum acyclic agreement forest (MAAF) , or
all maximum acyclic agreement forests (MAAFs)
of two or more given phylogenetic trees. Once our programs find an MAAF,
they also construct a reticulate network with the
minimum number of reticulation vertices.
for estimating lower bounds on the reticulation numbers of reticulate networks
for multiple phylogenetic trees.